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SRX15625586: Single-cell RNA-seq of P. vivax-infected primary human hepatocytes: infected, 5 dpi, replicate 1
1 ILLUMINA (HiSeq X Ten) run: 424.2M spots, 50.5G bases, 19.2Gb downloads

Design: Primary human hepatocytes were infected with P.vivax, 5 days post infection cells were: 1) detached from a 384-well plate, 2) loaded on to 10x Genomics' Chromium controller for partitioning, and 3) cDNA libraries were generated using 10x Genomics single-cell gene expression technology
Submitted by: University of Georgia
Study: Single-cell RNA profiling of Plasmodium vivax-infected hepatocytes reveals parasite- and host- specific transcriptomic signatures and therapeutic targets
show Abstracthide Abstract
In humans, malaria-causing Plasmodium parasites invade and replicate in the liver before mounting an infection in the blood. A few Plasmodium species, including P. vivax, can cause relapsing infections due to forms that persist in the liver known as hypnozoites. While interventions targeting the hypnozoite can prevent clinical malaria, little is known about their biology at the molecular level. Transcriptome-wide assessment of individual hypnozoites has not been accessible due to the technical challenges associated with liver stage infections. To overcome technical limitations, we performed single-cell transcriptional profiling of liver stages generated using an in vitro infection platform. In elucidating the transcriptional signatures of P. vivax liver forms, as well as hepatocytes in response to infection, our data provide new insights into these host-parasite interactions. An improved understanding of these interactions will allow for novel drug or vaccine interventions targeting either parasite- or hepatocyte- specific metabolic pathways essential for successful liver stage development and disease progression.
Sample: InfHep5dpi_rep1
SAMN28771609 • SRS13325712 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: InfHep5dpi_rep1
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC SINGLE CELL
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 424.2M spots, 50.5G bases, 19.2Gb
Run# of Spots# of BasesSizePublished
SRR19573612424,172,13250.5G19.2Gb2022-08-22

ID:
22239336

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